4H6VA

Structure of patellamide maturation protease pata
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 87
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-78 64 1-14, 79-277 14 199 knot
Chain Sequence
LKGDHNIRVAILDGPVDIAHPCFQGADLTVLPTLA-----SDGFMSAHGTHVASIIFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDHGHPLDFSNWGSTYEQQGILAPGEDILGAKPGGGTERLSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDAPEQARRCLAGRLNVSGAFTLLKGGN
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 13-74 62 1-12, 75-272 12 198 knot
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2.1 9-69 61 1-8 75-272 70-74 8 198 slipknot
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2.1 15-77 63 1-12, 81-272 13-14, 78-80 12 192 slipknot
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3.1 15-80 66 81-272 1-12 13-14 12 191 slipknot
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2.1 17-79 63 80-272 1-14 15-16 14 192 slipknot
sequence length 277
structure length 272
publication title Structures of cyanobactin maturation enzymes define a family of transamidating proteases.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Subtilisin-like protein
source organism Prochloron didemni
missing residues 36-40
total genus Genus: 87
ec nomenclature
pdb deposition date 2012-09-19
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00082 Peptidase_S8 Subtilase family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling