| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 6-220 | 215 | 1-5, 221-223 | 5 | 3 | knot | ||||
| view details |
 |
-31 | 6-164 | 159 | 1-5 | 217-223 | 165-216 | 5 | 7 | slipknot |
Chain Sequence |
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1m | 6-160 | 155 | 1-5 | 168-223 | 161-167 | 5 | 56 | slipknot | ||
| view details |
 |
3.1m | 6-170 | 165 | 1-5 | 176-223 | 171-175 | 5 | 48 | slipknot | ||
| view details |
|
2.1m | 7-181 | 175 | 1-6 | 191-223 | 182-190 | 6 | 33 | slipknot | ||
| view details |
|
3.1m | 9-197 | 189 | 1-8 | 205-223 | 198-204 | 8 | 19 | slipknot | ||
| view details |
|
3.1m | 10-204 | 195 | 1-9 | 216-223 | 205-215 | 9 | 8 | slipknot | ||
| view details |
|
3.1m | 5-215 | 211 | 1-4 | 217-223 | 216-216 | 4 | 7 | slipknot | ||
| view details |
|
2.1m | 8-184 | 177 | 1-6, 191-223 | 7-7, 185-190 | 6 | 33 | slipknot |
| sequence length |
223
|
| structure length |
223
|
| publication title |
Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Ubiquitin carboxyl-terminal hydrolase isozyme L1
|
| source organism |
Homo sapiens
|
| total genus |
 Genus: 72
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2013-03-09 |
| KnotProt deposition date | 2014-08-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
