| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
-52 | 5-220 | 216 | 1-4, 221-223 | 4 | 3 | knot | ||||
| view details |
 |
-31 | 6-162 | 157 | 1-5 | 217-223 | 163-216 | 5 | 7 | slipknot |
Chain Sequence |
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1m | 8-165 | 158 | 1-7 | 171-223 | 166-170 | 7 | 53 | slipknot | ||
| view details |
 |
3.1m | 8-185 | 178 | 1-7 | 201-223 | 186-200 | 7 | 23 | slipknot | ||
| view details |
|
3.1m | 10-200 | 191 | 1-9 | 211-223 | 201-210 | 9 | 13 | slipknot | ||
| view details |
|
2.1m | 10-210 | 201 | 1-9 | 216-223 | 211-215 | 9 | 8 | slipknot | ||
| view details |
|
3.1m | 6-215 | 210 | 1-1, 217-223 | 2-5, 216-216 | 1 | 7 | slipknot | |||
| view details |
 |
1.1m | 9-177 | 169 | 1-3, 186-223 | 4-8, 178-185 | 3 | 38 | slipknot |
| sequence length |
223
|
| structure length |
223
|
| publication title |
Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Ubiquitin carboxyl-terminal hydrolase isozyme L1
|
| source organism |
Homo sapiens
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2013-03-09 |
| KnotProt deposition date | 2014-08-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01088 | Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
