4JKJB

Crystal structure of the s18y variant of ubiquitin carboxy-terminal hydrolase l1
Knot K -52 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 6-162 157 1-5 217-223 163-216 5 7 slipknot
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-52 5-220 216 1-4, 221-223 4 3 knot
Chain Sequence
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 8-165 158 1-7 171-223 166-170 7 53 slipknot
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3.1m 8-185 178 1-7 201-223 186-200 7 23 slipknot
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3.1m 10-200 191 1-9 211-223 201-210 9 13 slipknot
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2.1m 10-210 201 1-9 216-223 211-215 9 8 slipknot
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3.1m 6-215 210 1-1, 217-223 2-5, 216-216 1 7 slipknot
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1.1m 9-177 169 1-3, 186-223 4-8, 178-185 3 38 slipknot
publication title Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
rcsb
structure length 223
molecule tags Hydrolase
source organism Homo sapiens
sequence length 223
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L1
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-03-09
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Image from the rcsb pdb (www.rcsb.org)
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