| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 100-144 | 45 | 1-99, 145-189 | 99 | 45 | knot |
Chain Sequence |
RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIK----KILTVNQVFEILSLWLEYRDWEKAFMEVIPKR
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 99-144 | 46 | 1-98, 145-185 | 98 | 41 | knot | ||||
| view details |
 |
2.1 | 97-141 | 45 | 1-96 | 147-185 | 142-146 | 96 | 39 | slipknot | ||
| view details |
|
3.1 | 100-145 | 46 | 146-185 | 1-98 | 99-99 | 98 | 39 | slipknot | ||
| view details |
|
|
3.1 | 101-157 | 57 | 1-99, 172-185 | 100-100, 158-171 | 99 | 14 | slipknot | ||
| view details |
|
|
2.1 | 101-171 | 71 | 1-99, 178-185 | 100-100, 172-177 | 99 | 8 | slipknot | ||
| view details |
|
|
3.1 | 102-157 | 56 | 1-100, 172-185 | 101-101, 158-171 | 100 | 14 | slipknot | ||
| view details |
|
|
3.1 | 102-171 | 70 | 1-100, 178-185 | 101-101, 172-177 | 100 | 8 | slipknot |
| sequence length |
189
|
| structure length |
185
|
| publication title |
Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (guanine(9)-N1)-methyltransferase
|
| source organism |
Schizosaccharomyces pombe
|
| missing residues |
154-157
|
| total genus |
 Genus: 62
|
| ec nomenclature |
ec
2.1.1.221: tRNA (guanine(9)-N(1))-methyltransferase. |
| pdb deposition date | 2013-03-27 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
