4KDZA

Crystal structure of trna/rrna methyltransferase yibk from escherichia coli (target nysgrc-012599)
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 78-119 42 1-77, 120-156 77 37 knot
Chain Sequence
MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 77-120 44 1-76, 121-156 76 36 knot
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2.1 74-117 44 1-73 123-156 118-122 73 34 slipknot
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2.1 79-122 44 123-156 1-76 77-78 76 33 slipknot
sequence length 156
structure length 156
publication title Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target NYSGRC-012599)
rcsb
molecule tags Transferase
molecule keywords tRNA (cytidine(34)-2'-O)-methyltransferase
source organism Escherichia coli
total genus Genus: 46
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2013-04-25
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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