4KGNA

Crystal structure of a trna (cytidine(34)-2'-o)-methyltransferase bound to s-adenosyl homocysteine
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 80-121 42 1-79, 122-156 79 35 knot
Chain Sequence
MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFP-----------------QMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 61-105 45 1-60, 106-139 60 34 knot
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2.1 64-125 62 126-139 1-60 61-63 60 13 slipknot
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2.1 65-126 62 127-139 1-63 64-64 63 12 slipknot
sequence length 156
structure length 139
publication title Crystal structure of a TrmH family tRNA methyltransferase bound to S-adenosyl homocysteine
rcsb
molecule tags Transferase
molecule keywords tRNA (cytidine(34)-2'-O)-methyltransferase
source organism Burkholderia pseudomallei
missing residues 39-55
total genus Genus: 45
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2013-04-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
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