| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 80-121 | 42 | 1-79, 122-156 | 79 | 35 | knot |
Chain Sequence |
MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFP-----------------QMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 61-105 | 45 | 1-60, 106-139 | 60 | 34 | knot | ||||
| view details |
 |
2.1 | 64-125 | 62 | 126-139 | 1-60 | 61-63 | 60 | 13 | slipknot | ||
| view details |
|
2.1 | 65-126 | 62 | 127-139 | 1-63 | 64-64 | 63 | 12 | slipknot |
| sequence length |
156
|
| structure length |
139
|
| publication title |
Crystal structure of a TrmH family tRNA methyltransferase bound to S-adenosyl homocysteine
rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (cytidine(34)-2'-O)-methyltransferase
|
| source organism |
Burkholderia pseudomallei
|
| missing residues |
39-55
|
| total genus |
 Genus: 45
|
| ec nomenclature |
ec
2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase. |
| pdb deposition date | 2013-04-29 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00588 | SpoU_methylase | SpoU rRNA Methylase family |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
