4L2ZA

Crystal structure of s-adenosylmethionine synthetase from sulfolobus solfataricus complexed with sae and ppi
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 25-291 267 1-24, 292-404 24 113 knot
Chain Sequence
MRNINVQLNPLSDIEKLQVELVERKGLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQIPVGTIIIESVKEWIRNNFRYLDAERHVIVDYKIGKGSSDLVGIFEASKRVPLSNDTSFGVGFAPLTKLEKLVYETERHLNSKQFKAKLPEVGEDIKVMGLRRGNEVDLTIAMATISELIEDVNHYINVKEQVRNQILDLASKIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHVGKLYNVLANLIANKIAQEVKDVKFSQVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKNEISGIVDEMLSSFNKLTELILEGKATLF
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 22-393 372 1-21, 394-404 21 11 knot
view details
2.1 23-284 262 1-22 298-404 285-297 22 107 slipknot
view details
3.1 23-321 299 1-22 394-404 322-393 22 11 slipknot
view details
1.1 34-305 272 1-16, 328-404 17-33, 306-327 16 77 slipknot
view details
2.1 34-327 294 1-22, 348-404 23-33, 328-347 22 57 slipknot
view details
2.1 34-347 314 1-22, 388-404 23-33, 348-387 22 17 slipknot
view details
2.1 33-387 355 1-22, 390-404 23-32, 388-389 22 15 slipknot
view details
2.1 34-389 356 1-22, 392-404 23-33, 390-391 22 13 slipknot
view details
2.1 33-391 359 1-21, 397-404 22-32, 392-396 21 8 slipknot
view details
2.1 34-391 358 1-32, 397-404 33-33, 392-396 32 8 slipknot
view details
2.1 35-329 295 1-33, 345-404 34-34, 330-344 33 60 slipknot
view details
2.1 35-355 321 1-33, 388-404 34-34, 356-387 33 17 slipknot
sequence length 404
structure length 404
publication title Understanding Molecular Recognition of Promiscuity of Thermophilic Methionine Adenosyltransferase, sMAT from Sulfolobus solfataricus.
pubmed doi rcsb
molecule tags Transferase
molecule keywords S-adenosylmethionine synthase
source organism Sulfolobus solfataricus
total genus Genus: 140
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2013-06-05
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01941 AdoMet_Synthase S-adenosylmethionine synthetase (AdoMet synthetase)
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling