4LLHA

Substrate bound outward-open state of the symporter betp
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 130-327 198 328-527 1-94 95-129 94 199 slipknot
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41 88-360 273 1-87 415-527 361-414 87 113 slipknot
Chain Sequence
SLNWSVIVPALVIVLATVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIAASKFGTIRLGRIDEAPEFRTVSWISMMFAAGMGIDLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAA---EDPSDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFFQMAGRTAMSADGTAGEWLGSWTIFYWAWWISWSPFVGMFLARISRGRSIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEEQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDLSNDVIYLEYREQQRFNARLARERRVHNEHRKRELAAKRR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 50-347 298 1-49 363-524 348-362 49 162 slipknot
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4.1 55-363 309 1-54 395-524 364-394 54 130 slipknot
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3.2 36-397 362 1-11, 420-524 12-35, 398-419 11 105 slipknot
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3.2 40-397 358 1-35, 420-524 36-39, 398-419 35 105 slipknot
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4.1 82-361 280 1-50, 401-524 51-81, 362-400 50 124 slipknot
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4.1 84-361 278 1-81, 401-524 82-83, 362-400 81 124 slipknot
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3.2 86-390 305 1-69, 407-524 70-85, 391-406 69 118 slipknot
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4.1 85-406 322 1-69, 410-524 70-84, 407-409 69 115 slipknot
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4.1 96-378 283 1-83, 404-524 84-95, 379-403 83 121 slipknot
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3.2 95-403 309 1-85, 407-524 86-94, 404-406 85 118 slipknot
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3.2 95-406 312 1-86, 409-524 87-94, 407-408 86 116 slipknot
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2.1 108-463 356 464-524 1-89 90-107 89 60 slipknot
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2.1 123-417 295 1-91, 456-524 92-122, 418-455 91 69 slipknot
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2.1 125-340 216 1-107, 357-524 108-124, 341-356 107 168 slipknot
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2.1 124-356 233 1-108, 359-524 109-123, 357-358 108 166 slipknot
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2.1 126-341 216 1-124, 356-524 125-125, 342-355 124 169 slipknot
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3.1 124-417 294 1-122, 436-524 123-123, 418-435 122 89 slipknot
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2.1 127-340 214 1-125, 349-524 126-126, 341-348 125 176 slipknot
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2.1 125-461 337 1-109, 479-524 110-124, 462-478 109 46 slipknot
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2.1 123-499 377 500-524 1-110 111-122 110 24 slipknot
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3.1 126-417 292 1-123, 436-524 124-125, 418-435 123 89 slipknot
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2.1 134-414 281 1-118, 457-524 119-133, 415-456 118 68 slipknot
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2.1 138-470 333 471-524 1-121 122-137 121 53 slipknot
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3.1 137-420 284 1-122, 471-524 123-136, 421-470 122 54 slipknot
missing residues 213-215
publication title Substrate-bound outward-open state of the betaine transporter BetP provides insights into Na(+) coupling.
pubmed doi rcsb
structure length 524
molecule tags Transport protein
source organism Corynebacterium glutamicum
sequence length 527
total genus Genus: 165
molecule keywords Glycine betaine transporter BetP
ec nomenclature
pdb deposition date 2013-07-09
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02028 BCCT BCCT family transporter
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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