4LLHB

Substrate bound outward-open state of the symporter betp
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 130-327 198 328-492 1-95 96-129 95 164 slipknot
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41 90-359 270 1-89 411-492 360-410 89 82 slipknot
Chain Sequence
SLNWSVIVPALVIVLATVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIAASKFGTIRLGRIDEAPEFRTVSWISMMFAAGMGIDLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFFQMAGRTAMSADGTAGEWLGSWTIFYWAWWISWSPFVGMFLARISRGRSIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEEQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDLSNDV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 49-350 302 1-48 368-492 351-367 48 125 slipknot
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4.1 80-361 282 1-79 401-492 362-400 79 92 slipknot
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3.2 80-400 321 1-79 402-492 401-401 79 91 slipknot
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3.2 29-403 375 1-28 416-492 404-415 28 77 slipknot
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3.2 44-401 358 1-26, 414-492 27-43, 402-413 26 79 slipknot
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4.1 47-401 355 1-43, 413-492 44-46, 402-412 43 80 slipknot
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4.1 82-361 280 1-79, 401-492 80-81, 362-400 79 92 slipknot
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4.1 82-400 319 1-79, 402-492 80-81, 401-401 79 91 slipknot
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4.1 85-361 277 1-81, 401-492 82-84, 362-400 81 92 slipknot
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4.1 85-400 316 1-81, 402-492 82-84, 401-401 81 91 slipknot
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3.2 92-389 298 1-75, 408-492 76-91, 390-407 75 85 slipknot
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3.2 91-407 317 1-75, 410-492 76-90, 408-409 75 83 slipknot
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3.2 92-409 318 1-75, 411-492 76-91, 410-410 75 82 slipknot
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3.2 93-389 297 1-91, 408-492 92-92, 390-407 91 85 slipknot
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3.2 93-407 315 1-91, 410-492 92-92, 408-409 91 83 slipknot
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3.2 97-384 288 1-84, 398-492 85-96, 385-397 84 95 slipknot
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2.1 112-417 306 1-90, 455-492 91-111, 418-454 90 38 slipknot
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3.1 127-329 203 1-105, 343-492 106-126, 330-342 105 150 slipknot
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2.1 127-342 216 1-108, 361-492 109-126, 343-360 108 132 slipknot
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2.1 126-466 341 467-492 1-108 109-125 108 25 slipknot
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2.1 137-422 286 1-120, 462-492 121-136, 423-461 120 31 slipknot
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2.1 137-461 325 1-120, 471-492 121-136, 462-470 120 22 slipknot
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3.1 137-470 334 1-125, 489-492 126-136, 471-488 125 4 slipknot
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2.1 136-416 281 1-122, 423-492 123-135, 417-422 122 70 slipknot
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2.1 136-488 353 489-492 1-125 126-135 125 3 slipknot
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1.1 139-348 210 1-126, 362-492 127-138, 349-361 126 131 slipknot
publication title Substrate-bound outward-open state of the betaine transporter BetP provides insights into Na(+) coupling.
pubmed doi rcsb
structure length 492
molecule tags Transport protein
source organism Corynebacterium glutamicum
sequence length 492
molecule keywords Glycine betaine transporter BetP
ec nomenclature
pdb deposition date 2013-07-09
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02028 BCCT BCCT family transporter
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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