4LLHC

Substrate bound outward-open state of the symporter betp
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 129-327 199 328-497 1-95 96-128 95 169 slipknot
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41 93-359 267 1-92 409-497 360-408 92 89 slipknot
Chain Sequence
SLNWSVIVPALVIVLATVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFIVVIAASKFGTIRLGRIDEAPEFRTVSWISMMFAAGMGIDLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANI---PSDWTIVGIVSVLTLAFIFSAISGIQ----YLSNANMVLAALLAIFVFVVGPTVSILNLLPGSIGNYLSNFFQMAGRTAMSADGTAGEWLGSWTIFYWAWWISWSPFVGMFLARISRGRSIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEEQLFGLLHALPGGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDLSNDVIYLEY
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 51-343 293 1-50 359-490 344-358 50 132 slipknot
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4.1 51-374 324 1-50 396-490 375-395 50 95 slipknot
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4.1 51-395 345 1-50 397-490 396-396 50 94 slipknot
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3.2 41-396 356 1-40 406-490 397-405 40 85 slipknot
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4.1 41-405 365 1-1, 410-490 2-40, 406-409 1 81 slipknot
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4.1 44-358 315 1-4, 369-490 5-43, 359-368 4 122 slipknot
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4.1 44-368 325 1-4, 375-490 5-43, 369-374 4 116 slipknot
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3.2 78-356 279 1-43, 397-490 44-77, 357-396 43 94 slipknot
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4.1 81-356 276 1-77, 397-490 78-80, 357-396 77 94 slipknot
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4.1 81-396 316 1-40, 398-490 41-80, 397-397 40 93 slipknot
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3.2 84-356 273 1-80, 397-490 81-83, 357-396 80 94 slipknot
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4.1 86-356 271 1-83, 397-490 84-85, 357-396 83 94 slipknot
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3.2 97-378 282 1-85, 395-490 86-96, 379-394 85 96 slipknot
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3.2 97-394 298 1-76, 399-490 77-96, 395-398 76 92 slipknot
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4.1 97-398 302 1-76, 401-490 77-96, 399-400 76 90 slipknot
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2.1 115-406 292 1-93, 452-490 94-114, 407-451 93 39 slipknot
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2.1 126-336 211 1-105, 349-490 106-125, 337-348 105 142 slipknot
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2.1 125-348 224 1-105, 353-490 106-124, 349-352 105 138 slipknot
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2.1 125-352 228 1-105, 354-490 106-124, 353-353 105 137 slipknot
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3.1 122-321 200 1-106, 337-490 107-121, 322-336 106 154 slipknot
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3.1 125-464 340 1-109, 485-490 110-124, 465-484 109 6 slipknot
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2.1 136-410 275 1-119, 460-490 120-135, 411-459 119 31 slipknot
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2.1 136-459 324 1-119, 467-490 120-135, 460-466 119 24 slipknot
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2.1 135-466 332 1-124, 473-490 125-134, 467-472 124 18 slipknot
missing residues 215-217, 241-244
publication title Substrate-bound outward-open state of the betaine transporter BetP provides insights into Na(+) coupling.
pubmed doi rcsb
structure length 490
molecule tags Transport protein
source organism Corynebacterium glutamicum
sequence length 497
molecule keywords Glycine betaine transporter BetP
ec nomenclature
pdb deposition date 2013-07-09
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02028 BCCT BCCT family transporter
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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