| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+61 | 63-278 | 216 | 1-62, 279-298 | 62 | 20 | knot | ||||
| view details |
 |
+31 | 122-233 | 112 | 1-28, 281-298 | 29-121, 234-280 | 28 | 18 | slipknot | |||
| view details |
 |
41 | 125-275 | 151 | 1-124, 276-298 | 124 | 22 | slipknot |
Chain Sequence |
RSVLGSFPQVDHHQAKGQLAEVYDDIHNTMRVPWVAFGIRVMSQFPHFIPDAWAALKPNIETRYAEDGADLIRLNSIVPGPVMPNPTPKLLRLGWTESKIEELKTALDLLNYGNPKYLILITAFNEAWHERDTGGRAPQKLRGRDAERIPYGLPNSVEKFNLLDIEKASDRTQTVLRDIRDAFLHHGPASDYRVLGVWPDYLEIALRDSLAPVALSAEYDETARRIRKIAREHVKGFDKPAGVAWRDMTEKLSAEQIAGLTGLLFMYNRFIADITIAIIRLKQAFSGPEDATANKYTN
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
6.1 | 12-285 | 274 | 1-11 | 293-298 | 286-292 | 11 | 6 | slipknot | ||
| view details |
 |
2.1 | 36-243 | 208 | 1-27, 266-298 | 28-35, 244-265 | 27 | 33 | slipknot | |||
| view details |
|
2.1 | 75-241 | 167 | 1-58, 272-298 | 59-74, 242-271 | 58 | 27 | slipknot | |||
| view details |
|
2.1 | 75-235 | 161 | 1-59, 242-298 | 60-74, 236-241 | 59 | 57 | slipknot | |||
| view details |
|
2.1 | 70-271 | 202 | 1-62, 279-298 | 63-69, 272-278 | 62 | 20 | slipknot | |||
| view details |
 |
3.1 | 106-241 | 136 | 1-74, 271-298 | 75-105, 242-270 | 74 | 28 | slipknot | |||
| view details |
|
2.1 | 87-270 | 184 | 1-74, 280-298 | 75-86, 271-279 | 74 | 19 | slipknot | |||
| view details |
|
2.1 | 87-279 | 193 | 1-74, 281-298 | 75-86, 280-280 | 74 | 18 | slipknot | |||
| view details |
|
3.1 | 109-241 | 133 | 1-105, 271-298 | 106-108, 242-270 | 105 | 28 | slipknot | |||
| view details |
|
2.1 | 106-270 | 165 | 1-86, 280-298 | 87-105, 271-279 | 86 | 19 | slipknot | |||
| view details |
|
2.1 | 106-279 | 174 | 1-86, 281-298 | 87-105, 280-280 | 86 | 18 | slipknot | |||
| view details |
|
2.1 | 107-234 | 128 | 1-78, 242-298 | 79-106, 235-241 | 78 | 57 | slipknot | |||
| view details |
|
2.1 | 108-270 | 163 | 1-105, 280-298 | 106-107, 271-279 | 105 | 19 | slipknot | |||
| view details |
|
2.1 | 108-279 | 172 | 1-105, 281-298 | 106-107, 280-280 | 105 | 18 | slipknot | |||
| view details |
|
2.1 | 121-241 | 121 | 1-108, 264-298 | 109-120, 242-263 | 108 | 35 | slipknot | |||
| view details |
|
2.1 | 121-263 | 143 | 1-108, 270-298 | 109-120, 264-269 | 108 | 29 | slipknot | |||
| view details |
 |
2.3 | 115-269 | 155 | 1-107, 278-298 | 108-114, 270-277 | 107 | 21 | slipknot | |||
| view details |
|
2.3 | 115-277 | 163 | 1-106, 283-298 | 107-114, 278-282 | 106 | 16 | slipknot | |||
| view details |
|
2.3 | 120-269 | 150 | 1-114, 278-298 | 115-119, 270-277 | 114 | 21 | slipknot | |||
| view details |
 |
1.1 | 120-277 | 158 | 1-114, 283-298 | 115-119, 278-282 | 114 | 16 | slipknot | |||
| view details |
|
2.1 | 120-235 | 116 | 1-108, 242-298 | 109-119, 236-241 | 108 | 57 | slipknot | |||
| view details |
 |
3.2m | 127-279 | 153 | 1-119, 292-298 | 120-126, 280-291 | 119 | 7 | slipknot |
| sequence length |
298
|
| structure length |
298
|
| publication title |
Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
DL-2-haloacid dehalogenase
|
| source organism |
Methylobacterium
|
| total genus |
 Genus: 113
|
| ec nomenclature |
ec
3.8.1.10: 2-haloacid dehalogenase (configuration-inverting). |
| pdb deposition date | 2013-10-06 |
| KnotProt deposition date | 2014-08-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10778 | DehI | Halocarboxylic acid dehydrogenase DehI |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
