4N2XA

Crystal structure of dl-2-haloacid dehalogenase
Knot K +61 +61 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+61 63-278 216 1-62, 279-298 62 20 knot
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+31 122-233 112 1-28, 281-298 29-121, 234-280 28 18 slipknot
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41 125-275 151 1-124, 276-298 124 22 slipknot
Chain Sequence
RSVLGSFPQVDHHQAKGQLAEVYDDIHNTMRVPWVAFGIRVMSQFPHFIPDAWAALKPNIETRYAEDGADLIRLNSIVPGPVMPNPTPKLLRLGWTESKIEELKTALDLLNYGNPKYLILITAFNEAWHERDTGGRAPQKLRGRDAERIPYGLPNSVEKFNLLDIEKASDRTQTVLRDIRDAFLHHGPASDYRVLGVWPDYLEIALRDSLAPVALSAEYDETARRIRKIAREHVKGFDKPAGVAWRDMTEKLSAEQIAGLTGLLFMYNRFIADITIAIIRLKQAFSGPEDATANKYTN
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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6.1 12-285 274 1-11 293-298 286-292 11 6 slipknot
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2.1 36-243 208 1-27, 266-298 28-35, 244-265 27 33 slipknot
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2.1 75-241 167 1-58, 272-298 59-74, 242-271 58 27 slipknot
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2.1 75-235 161 1-59, 242-298 60-74, 236-241 59 57 slipknot
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2.1 70-271 202 1-62, 279-298 63-69, 272-278 62 20 slipknot
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3.1 106-241 136 1-74, 271-298 75-105, 242-270 74 28 slipknot
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2.1 87-270 184 1-74, 280-298 75-86, 271-279 74 19 slipknot
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2.1 87-279 193 1-74, 281-298 75-86, 280-280 74 18 slipknot
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3.1 109-241 133 1-105, 271-298 106-108, 242-270 105 28 slipknot
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2.1 106-270 165 1-86, 280-298 87-105, 271-279 86 19 slipknot
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2.1 106-279 174 1-86, 281-298 87-105, 280-280 86 18 slipknot
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2.1 107-234 128 1-78, 242-298 79-106, 235-241 78 57 slipknot
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2.1 108-270 163 1-105, 280-298 106-107, 271-279 105 19 slipknot
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2.1 108-279 172 1-105, 281-298 106-107, 280-280 105 18 slipknot
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2.1 121-241 121 1-108, 264-298 109-120, 242-263 108 35 slipknot
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2.1 121-263 143 1-108, 270-298 109-120, 264-269 108 29 slipknot
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2.3 115-269 155 1-107, 278-298 108-114, 270-277 107 21 slipknot
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2.3 115-277 163 1-106, 283-298 107-114, 278-282 106 16 slipknot
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2.3 120-269 150 1-114, 278-298 115-119, 270-277 114 21 slipknot
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1.1 120-277 158 1-114, 283-298 115-119, 278-282 114 16 slipknot
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2.1 120-235 116 1-108, 242-298 109-119, 236-241 108 57 slipknot
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3.2m 127-279 153 1-119, 292-298 120-126, 280-291 119 7 slipknot
publication title Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
pubmed doi rcsb
structure length 298
molecule tags Hydrolase
source organism Methylobacterium
sequence length 298
total genus Genus: 113
molecule keywords DL-2-haloacid dehalogenase
ec nomenclature ec 3.8.1.10: 2-haloacid dehalogenase (configuration-inverting).
pdb deposition date 2013-10-06
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10778 DehI Halocarboxylic acid dehydrogenase DehI
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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