4O0PB

Crystal structure of d. radiodurans bacteriophytochrome photosensory core module in its dark form
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
41 32-271 240 1-31, 272-500 31 229 knot
Chain Sequence
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWP---HLSLTVHRVGELLILEFEPTEHAL-------RNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGLVQTDALGQL-WPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGGATPDLGPRHSFDTYL-----EEKRGYAEPWHPGEIEEAQDLRDTLTGALE
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
4.1 30-302 273 1-29, 303-484 29 182 knot
view details
3.2m 30-257 228 1-29 266-484 258-265 29 219 slipknot
view details
4.1 12-265 254 1-11 272-484 266-271 11 213 slipknot
view details
4.1 30-267 238 1-29 278-484 268-277 29 207 slipknot
view details
3.2m 29-277 249 1-28 279-484 278-278 28 206 slipknot
view details
3.2m 30-280 251 1-29 303-484 281-302 29 182 slipknot
view details
4.1 33-297 265 1-29, 338-484 30-32, 298-337 29 147 slipknot
view details
3.2 34-304 271 305-484 1-29 30-33 29 179 slipknot
sequence length 500
structure length 484
publication title Signal amplification and transduction in phytochrome photosensors
pubmed doi rcsb
molecule tags Transferase
molecule keywords Bacteriophytochrome
source organism Deinococcus radiodurans
missing residues 104-106, 128-134, 398, 455-459
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2013-12-14
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling