4O6DA

West nile virus non-structural protein 1 (ns1) form 1 crystal
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 63-155 93 1-62, 156-359 62 204 knot
Chain Sequence
LYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTAT---------------------ANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 56-135 80 1-55, 136-338 55 203 knot
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3.1 63-206 144 1-57, 278-338 58-62, 207-277 57 61 slipknot
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2.1 64-140 77 1-58, 152-338 59-63, 141-151 58 187 slipknot
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2.1 65-145 81 1-58, 229-338 59-64, 146-228 58 110 slipknot
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3.1 65-229 165 1-62, 256-338 63-64, 230-255 62 83 slipknot
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3.1 65-255 191 1-58, 316-338 59-64, 256-315 58 23 slipknot
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2.1 65-315 251 1-58, 336-338 59-64, 316-335 58 3 slipknot
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3.1 65-335 271 336-338 1-58 59-64 58 2 slipknot
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2.1 66-146 81 1-64, 226-338 65-65, 147-225 64 113 slipknot
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2.1 66-228 163 1-62, 235-338 63-65, 229-234 62 104 slipknot
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2.1 66-260 195 1-64, 311-338 65-65, 261-310 64 28 slipknot
missing residues 115-135
publication title Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system.
pubmed doi rcsb
structure length 338
molecule tags Viral protein
source organism West nile virus
sequence length 359
total genus Genus: 93
molecule keywords NS1
ec nomenclature
pdb deposition date 2013-12-20
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00948 Flavi_NS1 Flavivirus non-structural Protein NS1
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling