4O6DB

West nile virus non-structural protein 1 (ns1) form 1 crystal
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 88
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 82-173 92 1-81, 174-377 81 204 knot
Chain Sequence
XXXXXX--------------FQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATNNTFVVDGPETKEC----------------------PTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 60-138 79 1-59, 139-341 59 203 knot
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2.1 47-136 90 1-46 142-341 137-141 46 200 slipknot
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2.1 60-135 76 1-53, 139-341 54-59, 136-138 53 203 slipknot
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3.1 63-138 76 139-341 1-59 60-62 59 202 slipknot
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3.1 67-138 72 139-341 1-62 63-66 62 202 slipknot
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2.1 70-189 120 1-66, 208-341 67-69, 190-207 66 134 slipknot
sequence length 377
structure length 341
publication title Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords NS1
source organism West nile virus
missing residues 7-20, 133-154
total genus Genus: 88
ec nomenclature
pdb deposition date 2013-12-20
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00948 Flavi_NS1 Flavivirus non-structural Protein NS1
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling