4OQMA

Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with f-ara-edu
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 6-118 113 1-5 307-330 119-306 5 24 slipknot
Chain Sequence
KMPTLLRVYIDGPHGMGKTTTTQLLV----RDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAPPPA-----LTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGPRPHIGDTL---------------FTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLARTFAREMGE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 4-112 109 1-3 127-306 113-126 3 180 slipknot
view details
3.1 5-126 122 1-4 128-306 127-127 4 179 slipknot
view details
3.1 5-128 124 1-4 147-306 129-146 4 160 slipknot
view details
3.1 5-147 143 1-4 280-306 148-279 4 27 slipknot
missing residues 27-30, 104-108, 221-235
publication title Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with F-ARA-EdU
rcsb
structure length 306
molecule tags Transferase
source organism Human herpesvirus 1
sequence length 330
total genus Genus: 111
molecule keywords Thymidine kinase
ec nomenclature ec 2.7.1.21: Thymidine kinase.
pdb deposition date 2014-02-10
KnotProt deposition date 2014-08-16
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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