4OYFA

Crystal structure of gltph r397a in sodium-bound state
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 50-321 272 1-49 336-408 322-335 49 73 slipknot
Chain Sequence
EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQ---------LVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 40-300 261 1-39 319-399 301-318 39 81 slipknot
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2.1 39-319 281 1-38 339-399 320-338 38 61 slipknot
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2.1 41-343 303 1-40 360-399 344-359 40 40 slipknot
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2.1 58-311 254 1-45, 322-399 46-57, 312-321 45 78 slipknot
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2.1 58-321 264 1-45, 324-399 46-57, 322-323 45 76 slipknot
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1.1 60-344 285 1-45, 357-399 46-59, 345-356 45 43 slipknot
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1.1 61-302 242 1-47, 315-399 48-60, 303-314 47 85 slipknot
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1.1 62-322 261 1-48, 336-399 49-61, 323-335 48 64 slipknot
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1.1 62-310 249 1-60, 315-399 61-61, 311-314 60 85 slipknot
missing residues 113-121
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 399
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 408
total genus Genus: 150
molecule keywords GLUTAMATE SYMPORT PROTEIN
ec nomenclature
pdb deposition date 2014-02-11
KnotProt deposition date 2014-08-18
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling