4OYGA

Crystal structure of gltph r397a in complex with na+ and l-asp
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 53-320 268 1-52 367-411 321-366 52 45 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 45-309 265 1-44 330-411 310-329 44 82 slipknot
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2.1 40-331 292 1-39 349-411 332-348 39 63 slipknot
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2.1 43-353 311 1-42 370-411 354-369 42 42 slipknot
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2.1 43-329 287 1-31, 333-411 32-42, 330-332 31 79 slipknot
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2.1 45-330 286 1-42, 333-411 43-44, 331-332 42 79 slipknot
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1.1 52-333 282 1-41, 342-411 42-51, 334-341 41 70 slipknot
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1.1 56-359 304 1-42, 369-411 43-55, 360-368 42 43 slipknot
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1.1 62-332 271 1-47, 346-411 48-61, 333-345 47 66 slipknot
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1.1 63-357 295 1-51, 370-411 52-62, 358-369 51 42 slipknot
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1.1 64-312 249 1-51, 325-411 52-63, 313-324 51 87 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 411
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 411
molecule keywords 425aa long hypothetical proton glutamate symport protein
ec nomenclature
pdb deposition date 2014-02-12
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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