4OYGC

Crystal structure of gltph r397a in complex with na+ and l-asp
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 53-320 268 1-52 367-411 321-366 52 45 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 43-310 268 1-42 329-411 311-328 42 83 slipknot
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2.1 43-331 289 1-42 351-411 332-350 42 61 slipknot
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2.1 42-356 315 1-41 373-411 357-372 41 39 slipknot
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2.1 44-331 288 1-42, 347-411 43-43, 332-346 42 65 slipknot
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2.1 53-315 263 1-42, 327-411 43-52, 316-326 42 85 slipknot
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1.1 54-316 263 1-52, 327-411 53-53, 317-326 52 85 slipknot
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1.1 60-357 298 1-44, 370-411 45-59, 358-369 44 42 slipknot
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2.1 62-334 273 1-51, 346-411 52-61, 335-345 51 66 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 411
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 411
molecule keywords 425aa long hypothetical proton glutamate symport protein
ec nomenclature
pdb deposition date 2014-02-12
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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