4OYGD

Crystal structure of gltph r397a in complex with na+ and l-asp
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 53-321 269 1-52 367-411 322-366 52 45 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 42-309 268 1-41 331-411 310-330 41 81 slipknot
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2.1 41-335 295 1-40 348-411 336-347 40 64 slipknot
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2.1 43-354 312 1-42 370-411 355-369 42 42 slipknot
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1.1 51-314 264 1-41, 329-411 42-50, 315-328 41 83 slipknot
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1.1 55-359 305 1-42, 368-411 43-54, 360-367 42 44 slipknot
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1.1 54-314 261 1-50, 329-411 51-53, 315-328 50 83 slipknot
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1.1 62-357 296 1-50, 369-411 51-61, 358-368 50 43 slipknot
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1.1 63-334 272 1-52, 346-411 53-62, 335-345 52 66 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 411
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 411
molecule keywords 425aa long hypothetical proton glutamate symport protein
ec nomenclature
pdb deposition date 2014-02-12
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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