4P19C

Closed, apo inward-facing state of the glutamate transporter homologue gltph
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 49-324 276 1-48 339-413 325-338 48 75 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTEGT
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 45-312 268 1-44 344-413 313-343 44 70 slipknot
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2.1 20-359 340 1-7, 369-413 8-19, 360-368 7 45 slipknot
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2.1 60-313 254 1-46, 327-413 47-59, 314-326 46 87 slipknot
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2.1 56-326 271 1-46, 333-413 47-55, 327-332 46 81 slipknot
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2.1 54-332 279 1-47, 335-413 48-53, 333-334 47 79 slipknot
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1.1 62-331 270 1-49, 344-413 50-61, 332-343 49 70 slipknot
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1.1 62-343 282 1-49, 345-413 50-61, 344-344 49 69 slipknot
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2.1 58-328 271 1-55, 332-413 56-57, 329-331 55 82 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 413
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 413
molecule keywords 425aa long hypothetical proton glutamate symport protein
ec nomenclature
pdb deposition date 2014-02-25
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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