4P3JA

Apo inward-facing state of the glutamate transporter homologue gltph in alkali-free conditions
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 48-323 276 1-47 338-411 324-337 47 74 slipknot
Chain Sequence
YIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTEG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 44-308 265 1-43 346-411 309-345 43 66 slipknot
view details
2.1 14-358 345 1-13 368-411 359-367 13 44 slipknot
view details
1.1 60-316 257 1-47, 326-411 48-59, 317-325 47 86 slipknot
view details
2.1 55-325 271 1-47, 331-411 48-54, 326-330 47 81 slipknot
view details
1.1 62-330 269 1-47, 343-411 48-61, 331-342 47 69 slipknot
view details
1.1 60-326 267 1-54, 331-411 55-59, 327-330 54 81 slipknot
view details
2.1 59-325 267 1-54, 327-411 55-58, 326-326 54 85 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 411
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 411
total genus Genus: 149
molecule keywords GltPh
ec nomenclature
pdb deposition date 2014-03-08
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling