4P3JB

Apo inward-facing state of the glutamate transporter homologue gltph in alkali-free conditions
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 46-318 273 1-45 336-408 319-335 45 73 slipknot
Chain Sequence
EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 44-307 264 1-43 343-408 308-342 43 66 slipknot
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2.1 22-356 335 1-21 366-408 357-365 21 43 slipknot
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2.1 36-304 269 1-29, 308-408 30-35, 305-307 29 101 slipknot
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1.1 55-313 259 1-43, 324-408 44-54, 314-323 43 85 slipknot
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1.1 57-313 257 1-54, 324-408 55-56, 314-323 54 85 slipknot
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1.1 57-329 273 1-48, 338-408 49-56, 330-337 48 71 slipknot
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1.1 57-358 302 1-52, 363-408 53-56, 359-362 52 46 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 408
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 408
molecule keywords GltPh
ec nomenclature
pdb deposition date 2014-03-08
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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