4P3JC

Apo inward-facing state of the glutamate transporter homologue gltph in alkali-free conditions
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 46-321 276 1-45 339-411 322-338 45 73 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 46-308 263 1-45 346-411 309-345 45 66 slipknot
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2.1 21-358 338 1-20 369-411 359-368 20 43 slipknot
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2.1 40-358 319 1-23, 367-411 24-39, 359-366 23 45 slipknot
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2.1 62-324 263 1-47, 331-411 48-61, 325-330 47 81 slipknot
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2.1 62-330 269 1-47, 333-411 48-61, 331-332 47 79 slipknot
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1.1 62-332 271 1-50, 339-411 51-61, 333-338 50 73 slipknot
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1.1 62-338 277 1-50, 342-411 51-61, 339-341 50 70 slipknot
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1.1 60-313 254 1-51, 325-411 52-59, 314-324 51 87 slipknot
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1.1 62-317 256 1-59, 325-411 60-61, 318-324 59 87 slipknot
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
structure length 411
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 411
molecule keywords GltPh
ec nomenclature
pdb deposition date 2014-03-08
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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