4P6HC

Tl+-bound inward-facing state (bound conformation) of the glutamate transporter homologue gltph
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 48-322 275 1-47 338-410 323-337 47 73 slipknot
Chain Sequence
YIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLCMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 43-311 269 1-42 345-410 312-344 42 66 slipknot
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2.1 39-358 320 1-38 370-410 359-369 38 41 slipknot
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2.1 52-318 267 1-43, 328-410 44-51, 319-327 43 83 slipknot
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1.1 60-326 267 1-44, 343-410 45-59, 327-342 44 68 slipknot
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1.1 57-315 259 1-49, 324-410 50-56, 316-323 49 87 slipknot
view details
1.1 59-315 257 1-56, 324-410 57-58, 316-323 56 87 slipknot
sequence length 410
structure length 410
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords GltPh
source organism Pyrococcus horikoshii
ec nomenclature
pdb deposition date 2014-03-24
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
3KBCA 4P1AA 4P3JA 4P6HA
similar chains in the KnotProt database (40% sequence similarity)
6X12A 6X13A 6X14A 6X15A 6X16A
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the KnotProt database (40% sequence similarity)
3KBC A; 4P1A A; 4P3J A; 4P6H A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
6X12 A; 6X13 A; 6X14 A; 6X15 A; 6X16 A; 

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling
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