4Q0HA

Deinococcus radiodurans bphp pas-gaf
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 36-275 240 1-35, 276-324 35 49 knot
Chain Sequence
GSMSRDPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEA---TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 17-313 297 1-16, 314-321 16 8 knot
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3.2m 34-267 234 1-33 278-321 268-277 33 44 slipknot
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4.1 16-277 262 1-15 284-321 278-283 15 38 slipknot
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3.2m 33-281 249 1-32 292-321 282-291 32 30 slipknot
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3.2m 34-293 260 1-33 314-321 294-313 33 8 slipknot
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4.1 33-313 281 314-321 1-16 17-32 16 7 slipknot
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4.1 31-277 247 1-15, 282-321 16-30, 278-281 15 40 slipknot
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4.1 35-312 278 313-321 1-32 33-34 32 8 slipknot
view details
3.2 38-275 238 1-32, 282-321 33-37, 276-281 32 40 slipknot
missing residues 134-136
publication title Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements During Photoconversion.
pubmed doi rcsb
structure length 321
molecule tags Transferase
source organism Deinococcus radiodurans r1
sequence length 324
total genus Genus: 96
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2014-04-02
KnotProt deposition date 2014-08-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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