4Q0IA

Deinococcus radiodurans bphp pas-gaf d207a mutant
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 32-271 240 1-31, 272-321 31 50 knot
Chain Sequence
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTE------PHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASAIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAHHH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
4.1 26-306 281 1-25, 307-315 25 9 knot
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3.2m 31-261 231 1-30 272-315 262-271 30 44 slipknot
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4.1 9-271 263 1-8 277-315 272-276 8 39 slipknot
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3.2m 29-272 244 1-28 284-315 273-283 28 32 slipknot
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3.2m 29-285 257 1-28 307-315 286-306 28 9 slipknot
view details
3.2m 27-306 280 1-25, 315-315 26-26, 307-314 25 1 slipknot
missing residues 128-133
publication title Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements During Photoconversion.
pubmed doi rcsb
structure length 315
molecule tags Transferase
source organism Deinococcus radiodurans r1
sequence length 321
total genus Genus: 89
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2014-04-02
KnotProt deposition date 2014-08-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling