4Q0JA

Deinococcus radiodurans bphp photosensory module
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 148
Knot K 41 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 36-275 240 1-35, 276-503 35 228 knot
Chain Sequence
SMSRDPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWP--GHLSLTVHRVGELLILEFEPTETG----PHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGWSECLV--WLRPELRLEVAWGGATPDQAKDDLGPRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGAL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 34-308 275 1-33, 309-495 33 187 knot
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3.2m 35-276 242 1-34 288-495 277-287 34 208 slipknot
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3.2m 34-289 256 1-33 309-495 290-308 33 187 slipknot
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3.2 37-271 235 1-30, 280-495 31-36, 272-279 30 216 slipknot
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3.2 36-307 272 1-33, 313-495 34-35, 308-312 33 183 slipknot
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3.2 38-308 271 309-495 1-33 34-37 33 186 slipknot
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3.2 36-305 270 1-33, 308-495 34-35, 306-307 33 188 slipknot
sequence length 503
structure length 495
publication title Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion.
pubmed doi rcsb
molecule tags Transferase
molecule keywords Bacteriophytochrome
source organism Deinococcus radiodurans r1
missing residues 108-109, 132-135, 433-434
total genus Genus: 148
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2014-04-02
KnotProt deposition date 2014-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling