4R6LA

Crystal structure of bacteriophytochrome rpbphp2 from photosynthetic bacterium r. palustris
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 93
Knot K 41 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 14-257 244 1-13, 258-491 13 234 knot
Chain Sequence
STCDDEPIHIPGAIQPHGLLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALAEP----GAPIAVGFTDAGF---VGSWHRHDQLVFLELEPPPQAFFRR------TNSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPVTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGERLWGLIACHHRKPNYVDLDGRQACELVAQVLAWQIGVMEEQAITRQTLKGQAIQRSLINDIEQLHDHRAGLARNSEALLELMGASGLCLHSREGVITIGQTPPGPIIDQLAQLAGRSGGSELFQTDRLSTIIPEAGAFAEVASGVLAVPLSRTPPRRVMLWFRPEVAQTVYWAGNPDKSGRLRPRTSFAAWT-----EQTHGRAIAWQPHEVAAAVEIRDLIIDVIL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 13-283 271 1-12, 284-473 12 190 knot
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3.2m 11-239 229 1-10 249-473 240-248 10 225 slipknot
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3.2m 9-248 240 1-8 254-473 249-253 8 220 slipknot
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3.2m 13-251 239 1-12 262-473 252-261 12 212 slipknot
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3.2m 7-261 255 1-6 263-473 262-262 6 211 slipknot
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3.2m 13-263 251 1-12 284-473 264-283 12 190 slipknot
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3.2 15-281 267 1-12, 299-473 13-14, 282-298 12 175 slipknot
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4.1 16-286 271 287-473 1-12 13-15 12 186 slipknot
sequence length 491
structure length 473
publication title Light Signaling Mechanism of Two Tandem Bacteriophytochromes.
pubmed doi rcsb
molecule tags Signaling protein
molecule keywords Bacteriophytochrome (Light-regulated signal transduction his
source organism Rhodopseudomonas palustris cga009
missing residues 72-75, 85-87, 110-115, 444-448
total genus Genus: 93
ec nomenclature
pdb deposition date 2014-08-25
KnotProt deposition date 2015-07-22
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling