4R6LA

Crystal structure of bacteriophytochrome rpbphp2 from photosynthetic bacterium r. palustris
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 14-257 244 1-13, 258-491 13 234 knot
Chain Sequence
STCDDEPIHIPGAIQPHGLLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALAEP----GAPIAVGFTDAGF---VGSWHRHDQLVFLELEPPPQAFFRR------TNSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPVTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGERLWGLIACHHRKPNYVDLDGRQACELVAQVLAWQIGVMEEQAITRQTLKGQAIQRSLINDIEQLHDHRAGLARNSEALLELMGASGLCLHSREGVITIGQTPPGPIIDQLAQLAGRSGGSELFQTDRLSTIIPEAGAFAEVASGVLAVPLSRTPPRRVMLWFRPEVAQTVYWAGNPDKSGRLRPRTSFAAWT-----EQTHGRAIAWQPHEVAAAVEIRDLIIDVIL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 13-283 271 1-12, 284-473 12 190 knot
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3.2m 11-239 229 1-10 249-473 240-248 10 225 slipknot
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3.2m 9-248 240 1-8 254-473 249-253 8 220 slipknot
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3.2m 13-251 239 1-12 262-473 252-261 12 212 slipknot
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3.2m 7-261 255 1-6 263-473 262-262 6 211 slipknot
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3.2m 13-263 251 1-12 284-473 264-283 12 190 slipknot
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3.2 15-281 267 1-12, 299-473 13-14, 282-298 12 175 slipknot
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4.1 16-286 271 287-473 1-12 13-15 12 186 slipknot
missing residues 72-75, 85-87, 110-115, 444-448
publication title Light Signaling Mechanism of Two Tandem Bacteriophytochromes.
pubmed doi rcsb
structure length 473
molecule tags Signaling protein
source organism Rhodopseudomonas palustris cga009
sequence length 491
total genus Genus: 93
molecule keywords Bacteriophytochrome (Light-regulated signal transduction his
ec nomenclature
pdb deposition date 2014-08-25
KnotProt deposition date 2015-07-22
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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