4TN0A

Crystal structure of the c-terminal periplasmic domain of phosphoethanolamine transferase eptc from campylobacter jejuni
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 121
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 24-225 202 1-23 254-311 226-253 23 58 slipknot
Chain Sequence
MFKTIANDAYR---HTKKLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVFFDNFSSCGTAAVS-LPCMFSISKRENYSSSEFQENAMDVLYKTGVDAAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLLIPFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENGIYLHGMPYAIAPSYQTHIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFNVKTSVYEPEYDLLNPKLKANP
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 17-221 205 1-16 242-307 222-241 16 66 slipknot
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3.1 18-223 206 1-17 249-307 224-248 17 59 slipknot
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3.1 12-248 237 1-11 251-307 249-250 11 57 slipknot
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2.1 9-220 212 1-4, 222-307 5-8, 221-221 4 86 slipknot
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2.1 12-220 209 1-8, 222-307 9-11, 221-221 8 86 slipknot
sequence length 311
structure length 307
publication title Crystallographic Study of the EptC Phosphoethanolamine Transferase Required for Polymyxin Resistance and Motility in Campylobacter jejuni
doi rcsb
molecule tags Transferase
molecule keywords UPF0141 protein yjdB
source organism Campylobacter jejuni subsp. jejuni hb93-13
missing residues 12-14, 65
total genus Genus: 121
ec nomenclature
pdb deposition date 2014-06-02
KnotProt deposition date 2014-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling