| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 38-233 | 196 | 234-441 | 1-20 | 21-37 | 20 | 207 | slipknot | ||
| view details |
 |
41 | 15-266 | 252 | 1-14 | 315-441 | 267-314 | 14 | 127 | slipknot |
Chain Sequence |
GREQWASRLGFILAAMGSAVGLGNIWRFSYVTGENGGAAFLLVYLGFIALIGIPIVLAEFTIGRRAQSDAVGSFEKLAPGKPWKVAGLMGVAAGFLILSFYGVIAGWILFYLFNYITGQLWSAPAEGFGGFFEGFIANPTLPLFWQALFMIATIWIVAIGVKKGIERSNKILMPLLGVLLIALAIYSLTLGGAKEGLAFLFSPDWSALKDPGVYLAAISQAFFTLSLGMGALITYGSYVSKDSRLPGAAVSVAGLDTAFAIIAGIMIFPAVFALGLSPSGGPGLVFVVLPDIFDSIRLGPIVGIAFFILLGAAALSSAVSLLEVPVAYFMRKFDWSRKQAAITLGVIITLLGIPSSLSFGVLGEVTIIPGLNIFDSVDFIASSVFLPLGGMIIALFIGWGWKTSDALAESDLTDSVWGKLWILSLRFIAPIAILIVFLSAF
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.2 | 17-260 | 244 | 1-16 | 276-441 | 261-275 | 16 | 166 | slipknot | ||
| view details |
|
3.2 | 8-288 | 281 | 1-7 | 302-441 | 289-301 | 7 | 140 | slipknot | ||
| view details |
 |
4.1 | 11-299 | 289 | 1-10 | 305-441 | 300-304 | 10 | 137 | slipknot | ||
| view details |
|
3.2 | 16-302 | 287 | 1-15 | 317-441 | 303-316 | 15 | 125 | slipknot | ||
| view details |
|
4.1 | 11-275 | 265 | 1-4, 280-441 | 5-10, 276-279 | 4 | 162 | slipknot | |||
| view details |
|
4.1 | 11-289 | 279 | 1-7, 299-441 | 8-10, 290-298 | 7 | 143 | slipknot | |||
| view details |
|
4.1 | 15-300 | 286 | 1-10, 303-441 | 11-14, 301-302 | 10 | 139 | slipknot | |||
| view details |
|
3.2 | 19-292 | 274 | 1-12, 300-441 | 13-18, 293-299 | 12 | 142 | slipknot | |||
| view details |
 |
1.1 | 26-249 | 224 | 1-16, 264-441 | 17-25, 250-263 | 16 | 178 | slipknot | |||
| view details |
 |
2.1 | 34-233 | 200 | 1-17, 253-441 | 18-33, 234-252 | 17 | 189 | slipknot | |||
| view details |
|
2.1 | 43-318 | 276 | 1-20, 357-441 | 21-42, 319-356 | 20 | 85 | slipknot | |||
| view details |
|
2.1 | 42-382 | 341 | 383-441 | 1-22 | 23-41 | 22 | 58 | slipknot | ||
| view details |
|
2.1 | 35-233 | 199 | 1-33, 253-441 | 34-34, 234-252 | 33 | 189 | slipknot | |||
| view details |
|
1.1 | 34-255 | 222 | 1-25, 262-441 | 26-33, 256-261 | 25 | 180 | slipknot | |||
| view details |
|
1.1 | 36-221 | 186 | 1-28, 227-441 | 29-35, 222-226 | 28 | 215 | slipknot | |||
| view details |
|
1.1 | 42-251 | 210 | 1-28, 271-441 | 29-41, 252-270 | 28 | 171 | slipknot | |||
| view details |
|
1.1 | 39-220 | 182 | 1-29, 229-441 | 30-38, 221-228 | 29 | 213 | slipknot | |||
| view details |
|
1.1 | 44-251 | 208 | 1-41, 266-441 | 42-43, 252-265 | 41 | 176 | slipknot | |||
| view details |
|
1.1 | 43-247 | 205 | 1-34, 252-441 | 35-42, 248-251 | 34 | 190 | slipknot | |||
| view details |
|
2.1 | 42-236 | 195 | 1-34, 248-441 | 35-41, 237-247 | 34 | 194 | slipknot | |||
| view details |
|
2.1 | 42-374 | 333 | 1-35, 380-441 | 36-41, 375-379 | 35 | 62 | slipknot | |||
| view details |
|
2.1 | 43-243 | 201 | 1-41, 246-441 | 42-42, 244-245 | 41 | 196 | slipknot |
| sequence length |
441
|
| structure length |
441
|
| publication title |
A Mechanism for Intracellular Release of Na by Neurotransmitter:Sodium Symporters
rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
TRANSPORTER
|
| source organism |
Bacillus halodurans
|
| total genus |
 Genus: 179
|
| ec nomenclature | |
| pdb deposition date | 2014-07-02 |
| KnotProt deposition date | 2014-09-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00209 | SNF | Sodium:neurotransmitter symporter family |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
