4US3A

Crystal structure of the bacterial nss member mhst in an occluded inward-facing state
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 38-233 196 234-441 1-20 21-37 20 207 slipknot
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41 15-266 252 1-14 315-441 267-314 14 127 slipknot
Chain Sequence
GREQWASRLGFILAAMGSAVGLGNIWRFSYVTGENGGAAFLLVYLGFIALIGIPIVLAEFTIGRRAQSDAVGSFEKLAPGKPWKVAGLMGVAAGFLILSFYGVIAGWILFYLFNYITGQLWSAPAEGFGGFFEGFIANPTLPLFWQALFMIATIWIVAIGVKKGIERSNKILMPLLGVLLIALAIYSLTLGGAKEGLAFLFSPDWSALKDPGVYLAAISQAFFTLSLGMGALITYGSYVSKDSRLPGAAVSVAGLDTAFAIIAGIMIFPAVFALGLSPSGGPGLVFVVLPDIFDSIRLGPIVGIAFFILLGAAALSSAVSLLEVPVAYFMRKFDWSRKQAAITLGVIITLLGIPSSLSFGVLGEVTIIPGLNIFDSVDFIASSVFLPLGGMIIALFIGWGWKTSDALAESDLTDSVWGKLWILSLRFIAPIAILIVFLSAF
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 17-260 244 1-16 276-441 261-275 16 166 slipknot
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3.2 8-288 281 1-7 302-441 289-301 7 140 slipknot
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4.1 11-299 289 1-10 305-441 300-304 10 137 slipknot
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3.2 16-302 287 1-15 317-441 303-316 15 125 slipknot
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4.1 11-275 265 1-4, 280-441 5-10, 276-279 4 162 slipknot
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4.1 11-289 279 1-7, 299-441 8-10, 290-298 7 143 slipknot
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4.1 15-300 286 1-10, 303-441 11-14, 301-302 10 139 slipknot
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3.2 19-292 274 1-12, 300-441 13-18, 293-299 12 142 slipknot
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1.1 26-249 224 1-16, 264-441 17-25, 250-263 16 178 slipknot
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2.1 34-233 200 1-17, 253-441 18-33, 234-252 17 189 slipknot
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2.1 43-318 276 1-20, 357-441 21-42, 319-356 20 85 slipknot
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2.1 42-382 341 383-441 1-22 23-41 22 58 slipknot
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2.1 35-233 199 1-33, 253-441 34-34, 234-252 33 189 slipknot
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1.1 34-255 222 1-25, 262-441 26-33, 256-261 25 180 slipknot
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1.1 36-221 186 1-28, 227-441 29-35, 222-226 28 215 slipknot
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1.1 42-251 210 1-28, 271-441 29-41, 252-270 28 171 slipknot
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1.1 39-220 182 1-29, 229-441 30-38, 221-228 29 213 slipknot
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1.1 44-251 208 1-41, 266-441 42-43, 252-265 41 176 slipknot
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1.1 43-247 205 1-34, 252-441 35-42, 248-251 34 190 slipknot
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2.1 42-236 195 1-34, 248-441 35-41, 237-247 34 194 slipknot
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2.1 42-374 333 1-35, 380-441 36-41, 375-379 35 62 slipknot
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2.1 43-243 201 1-41, 246-441 42-42, 244-245 41 196 slipknot
publication title A Mechanism for Intracellular Release of Na by Neurotransmitter:Sodium Symporters
rcsb
structure length 441
molecule tags Transport protein
source organism Bacillus halodurans
sequence length 441
total genus Genus: 179
molecule keywords TRANSPORTER
ec nomenclature
pdb deposition date 2014-07-02
KnotProt deposition date 2014-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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