| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 15-249 | 235 | 1-14, 250-488 | 14 | 239 | knot |
Chain Sequence |
LDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGAASNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAAAWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKTEE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 13-285 | 273 | 1-12, 286-488 | 12 | 203 | knot | ||||
| view details |
 |
3.2m | 12-245 | 234 | 1-11 | 254-488 | 246-253 | 11 | 235 | slipknot | ||
| view details |
|
4.1 | 9-253 | 245 | 1-8 | 259-488 | 254-258 | 8 | 230 | slipknot | ||
| view details |
|
3.2m | 13-257 | 245 | 1-12 | 265-488 | 258-264 | 12 | 224 | slipknot | ||
| view details |
|
3.2m | 13-264 | 252 | 1-12 | 286-488 | 265-285 | 12 | 203 | slipknot | ||
| view details |
|
4.1 | 17-445 | 429 | 446-488 | 1-12 | 13-16 | 12 | 42 | slipknot | ||
| view details |
 |
3.2 | 17-287 | 271 | 1-12, 445-488 | 13-16, 288-444 | 12 | 44 | slipknot | |||
| view details |
|
4.1 | 16-444 | 429 | 1-12, 446-488 | 13-15, 445-445 | 12 | 43 | slipknot | |||
| view details |
|
3.2 | 18-319 | 302 | 1-16, 438-488 | 17-17, 320-437 | 16 | 51 | slipknot |
| sequence length |
488
|
| structure length |
488
|
| publication title |
The photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form, chromophore modelled with an exocyclic double bond in pyrrole ring A.
rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Bacteriophytochrome protein
|
| source organism |
Agrobacterium tumefaciens
|
| ec nomenclature | |
| pdb deposition date | 2014-10-02 |
| KnotProt deposition date | 2015-12-23 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
