4WLQA

Crystal structure of much37-hrpn13 ctd complex
Warning
  • Chain breaks within knot 52 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 98
Alphaknot: Q9WUP7
Knot K -52 -31 -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-52 5-219 215 1-4, 220-309 4 90 knot
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-31 5-160 156 1-4 216-309 161-215 4 94 slipknot
Chain Sequence
GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE-----------AFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMTVLSAIQSEVA------RNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEK
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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5.2m 5-211 207 1-4, 212-292 4 81 knot
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2.1m 6-151 146 1-5 163-292 152-162 5 130 slipknot
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3.1m 7-170 164 1-6 191-292 171-190 6 102 slipknot
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3.1m 5-190 186 1-4 205-292 191-204 4 88 slipknot
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2.1m 7-191 185 1-4, 204-292 5-6, 192-203 4 89 slipknot
sequence length 309
structure length 292
publication title Structural Basis for the Activation and Inhibition of the UCH37 Deubiquitylase.
doi rcsb
molecule tags Protein binding
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L5
source organism Mus musculus
missing residues 146-156, 243-248
total genus Genus: 98
ec nomenclature
pdb deposition date 2014-10-07
KnotProt deposition date 2015-03-05
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling