4WLQA

Crystal structure of much37-hrpn13 ctd complex
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 52 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K -52 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
-31 5-160 156 1-4 216-309 161-215 4 94 slipknot
view details
-52 5-219 215 1-4, 220-309 4 90 knot
Chain Sequence
GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFE-----------AFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMTVLSAIQSEVA------RNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
5.2m 5-211 207 1-4, 212-292 4 81 knot
view details
2.1m 6-151 146 1-5 163-292 152-162 5 130 slipknot
view details
3.1m 7-170 164 1-6 191-292 171-190 6 102 slipknot
view details
3.1m 5-190 186 1-4 205-292 191-204 4 88 slipknot
view details
2.1m 7-191 185 1-4, 204-292 5-6, 192-203 4 89 slipknot
missing residues 146-156, 243-248
publication title Structural Basis for the Activation and Inhibition of the UCH37 Deubiquitylase.
doi rcsb
structure length 292
molecule tags Protein binding
source organism Mus musculus
sequence length 309
total genus Genus: 98
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L5
ec nomenclature
pdb deposition date 2014-10-07
KnotProt deposition date 2015-03-05
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling