4WZSC

Crystal structure of the mot1 n-terminal domain in complex with tbp and nc2 bound to a promoter dna fragment
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 182
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 74-196 123 1-73, 197-778 73 582 knot
Chain Sequence
MNRLEKFFTTLNTAQSKVLKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN---------------------------------------------DERPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEIREMAIKLLKKLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGINVVGKD---EILKNRCLLFECIMKSGLPDLQSTITTSRTFISLYRSVQALVPANIEELEYYFDRCKDLKMAPLKEFKKKLSA--PGIRSIHPMVDPLYSDYTR------MVASIEFPGLERATALFEVETCKQFLHLFSKMITEYYDAEKISIDNFLLKAYEGLASGKDGFLSFFEVFNTRLLAHSFFHKIGSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNITVINGFMRSLEFNEKFVRKALEDLDVELLDAVLMSGDHSFNPLFVKPLLRNISGNIDREASSKVLSKVIPTLGFSTNTKISKDLLEMIEREKKSLESL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 72-197 126 1-71, 198-722 71 525 knot
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3.1 71-152 82 1-70 188-722 153-187 70 535 slipknot
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3.1 71-187 117 1-70 198-722 188-197 70 525 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling