4XTQA

Crystal structure of a mutant (c20s) of a near-infrared fluorescent protein bphp1-fp
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
41 31-270 240 1-30, 271-317 30 47 knot
Chain Sequence
RSMVAGHASG--------------EEIHLAGSIQPHGALLVVSEHDHRVIQASANAAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYCGLMHRPPEGGLIIELERAGPSIDLSGTLAPALERIRTAGSLRALCDDTVLLFQQCTGYDRVMVYRFDEQGHGLVFSECHVPGLESYFGNRYPSSTVPQMARQLYVRQRVRVLVDVTYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPCHLQYLKDMGVRATLAVSLVVGGKLWGLVVCHHYLPRFIRFELRAICKRLAERIATRITALES
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
4.1 30-311 282 1-29, 312-317 29 6 knot
view details
3.2m 31-267 237 1-30 276-317 268-275 30 42 slipknot
view details
4.1 26-275 250 1-25 280-317 276-279 25 38 slipknot
view details
4.1 26-279 254 1-25 281-317 280-280 25 37 slipknot
view details
4.1 31-277 247 1-30 288-317 278-287 30 30 slipknot
view details
3.2m 31-290 260 1-30 312-317 291-311 30 6 slipknot
missing residues 11-24
publication title Molecular Basis of Spectral Diversity in Near-Infrared Phytochrome-Based Fluorescent Proteins.
pubmed doi rcsb
structure length 303
molecule tags Fluorescent protein
source organism Rhodopseudomonas palustris
sequence length 317
total genus Genus: 92
molecule keywords BphP1-FP/C20S
ec nomenclature
pdb deposition date 2015-01-23
KnotProt deposition date 2018-09-12
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling