| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 31-271 | 241 | 1-30, 272-319 | 30 | 48 | knot |
Chain Sequence |
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 28-311 | 284 | 1-27, 312-319 | 27 | 8 | knot | ||||
| view details |
 |
3.2m | 27-265 | 239 | 1-26 | 276-319 | 266-275 | 26 | 44 | slipknot | ||
| view details |
|
4.1 | 11-275 | 265 | 1-10 | 280-319 | 276-279 | 10 | 40 | slipknot | ||
| view details |
|
3.2m | 30-291 | 262 | 1-29 | 312-319 | 292-311 | 29 | 8 | slipknot | ||
| view details |
|
3.2m | 29-313 | 285 | 1-27, 319-319 | 28-28, 314-318 | 27 | 1 | slipknot |
| sequence length |
319
|
| structure length |
319
|
| publication title |
X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
|
| total genus |
 Genus: 93
|
| ec nomenclature | |
| pdb deposition date | 2015-02-10 |
| KnotProt deposition date | 2015-05-21 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
