4Y3IA

Pas-gaf fragment from deinococcus radiodurans bphp assembled with bv - y307s, low dose
Knot K 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 31-271 241 1-30, 272-319 30 48 knot
Chain Sequence
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 28-311 284 1-27, 312-319 27 8 knot
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3.2m 27-265 239 1-26 276-319 266-275 26 44 slipknot
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4.1 11-275 265 1-10 280-319 276-279 10 40 slipknot
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3.2m 30-291 262 1-29 312-319 292-311 29 8 slipknot
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3.2m 29-313 285 1-27, 319-319 28-28, 314-318 27 1 slipknot
publication title X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
pubmed doi rcsb
structure length 319
molecule tags Transferase
source organism Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
sequence length 319
total genus Genus: 93
molecule keywords Bacteriophytochrome
ec nomenclature
pdb deposition date 2015-02-10
KnotProt deposition date 2015-05-21
Image from the rcsb pdb (www.rcsb.org)
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