| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 31-271 | 241 | 1-30, 272-319 | 30 | 48 | knot |
Chain Sequence |
DPLPFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDSTGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVKEAH
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.2m | 28-308 | 281 | 1-27, 309-319 | 27 | 11 | knot | ||||
| view details |
|
3.2m | 29-265 | 237 | 1-28 | 277-319 | 266-276 | 28 | 43 | slipknot | ||
| view details |
 |
4.1 | 13-276 | 264 | 1-12 | 282-319 | 277-281 | 12 | 38 | slipknot | ||
| view details |
|
3.2m | 30-278 | 249 | 1-29 | 290-319 | 279-289 | 29 | 30 | slipknot | ||
| view details |
|
3.2m | 30-289 | 260 | 1-29 | 304-319 | 290-303 | 29 | 16 | slipknot | ||
| view details |
|
3.2m | 19-276 | 258 | 1-12, 279-319 | 13-18, 277-278 | 12 | 41 | slipknot | |||
| view details |
 |
3.2 | 33-310 | 278 | 311-319 | 1-27 | 28-32 | 27 | 8 | slipknot |
| sequence length |
319
|
| structure length |
319
|
| publication title |
X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
|
| total genus |
 Genus: 92
|
| ec nomenclature | |
| pdb deposition date | 2015-02-11 |
| KnotProt deposition date | 2015-05-21 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
