4YK8B

Crystal structure of the atg101-atg13 complex from fission yeast
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 40
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 115-214 100 1-81, 219-235 82-114, 215-218 81 17 slipknot
Chain Sequence
GGRSAKLGQVIHHCFYKTGLIILESRLN--------ESSKNNKWFNLEIVETELYAEQFKIWKNIELSPSRKIPPMVLHTYLDISDLSKIVLERWI------------------------VNLDGEALSTELAVLYKKLVVLFRSLYTYTHLMPLWKLKSKI--HKLRAHLKVGCALSTDDSNDFLPISAPSSLGSSIATFSFS---PVGTPAGDFRISVQ--YRKNCHFEVH
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 85-170 86 1-71, 184-194 72-84, 171-183 71 11 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling