| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 89-132 | 44 | 1-88, 133-248 | 88 | 116 | knot |
Chain Sequence |
SHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGV---------DSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 88-133 | 46 | 1-87, 134-239 | 87 | 106 | knot | ||||
| view details |
 |
2.1 | 85-130 | 46 | 1-84 | 136-239 | 131-135 | 84 | 104 | slipknot | ||
| view details |
|
|
2.1 | 90-200 | 111 | 1-87, 209-239 | 88-89, 201-208 | 87 | 31 | slipknot | ||
| view details |
|
|
2.1 | 90-208 | 119 | 1-87, 211-239 | 88-89, 209-210 | 87 | 29 | slipknot | ||
| view details |
|
|
2.1 | 90-210 | 121 | 211-239 | 1-87 | 88-89 | 87 | 28 | slipknot |
| sequence length |
248
|
| structure length |
239
|
| publication title |
Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
pubmed doi rcsb |
| molecule tags |
Transferase/rna
|
| molecule keywords |
tRNA (guanine-N(1)-)-methyltransferase
|
| source organism |
Haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd)
|
| missing residues |
162-170
|
| total genus |
 Genus: 68
|
| ec nomenclature |
ec
2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase. |
| pdb deposition date | 2015-03-20 |
| KnotProt deposition date | 2015-12-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
