4YZFA

Crystal structure of the anion exchanger domain of human erythrocyte band 3
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 31 31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 112-301 190 302-507 1-38 39-111 38 205 slipknot
Chain Sequence
GLVRDIRRRYPYYLSDITDAFSPQVLAAVIFIYFAALSPAITFGGLLGEKTRNQMGVSELLISTAVQGILFALLGAQPLLVVGFSGPLLVFEEAFFSFCETNGLEYIVGRVWIGFWLILLVVLVVAFEGSFLVRFISRYTQEIFSFLISLIFIYETFSKLIKIFQDHPLQKTY-------------LPNTALLSLVLMAGTFFFAMMLRKFKNSSYFPGKLRRVIGDFGVPISILIMVLVDFFIQDTYTQKLSVPDGFKVVIHPLGLRSEFPI--------WMMFASALPALLVFILIFLESQITTLIVSKPERKMVKGSGFHLDLLLVVGMGGVAALFGMPWLSATTVRSVTHANALTVMIQEVKEQRISGLLVAVLVGLS-----------ILMEPILSRIPLAVLFGIFLYMGVTSLSGIQLFDRILLLFKPPKYHPDVPYVKRVKTWRMHLFTGIQIICLAVLWVVKSTPASLALPFVLILTVPLRRVLLPLIFRNVELQCLD
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 66-387 322 388-475 1-32 33-65 32 87 slipknot
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2.1 65-354 290 1-34, 376-475 35-64, 355-375 34 100 slipknot
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1.1 52-273 222 1-35, 286-475 36-51, 274-285 35 190 slipknot
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2.1 51-288 238 1-35, 301-475 36-50, 289-300 35 175 slipknot
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1.1 66-271 206 1-53, 286-475 54-65, 272-285 53 190 slipknot
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1.1 65-285 221 1-53, 287-475 54-64, 286-286 53 189 slipknot
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1.1 66-286 221 1-53, 289-475 54-65, 287-288 53 187 slipknot
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1.1 65-288 224 1-53, 290-475 54-64, 289-289 53 186 slipknot
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2.1 100-445 346 446-475 1-80 81-99 80 29 slipknot
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2.1 96-284 189 1-81, 300-475 82-95, 285-299 81 176 slipknot
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2.1 115-347 233 1-81, 371-475 82-114, 348-370 81 105 slipknot
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1.1 97-271 175 1-82, 288-475 83-96, 272-287 82 188 slipknot
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2.1 97-332 236 1-82, 348-475 83-96, 333-347 82 128 slipknot
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2.1 106-374 269 1-82, 442-475 83-105, 375-441 82 34 slipknot
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2.1 105-441 337 1-88, 457-475 89-104, 442-456 88 19 slipknot
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3.1 105-333 229 1-96, 348-475 97-104, 334-347 96 128 slipknot
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3.1 107-333 227 1-104, 348-475 105-106, 334-347 104 128 slipknot
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3.1 108-333 226 1-106, 348-475 107-107, 334-347 106 128 slipknot
missing residues 174-186, 261-268, 362-372
publication title Crystal structure of the anion exchanger domain of human erythrocyte Band 3
doi rcsb
structure length 475
molecule tags Immune system
sequence length 507
total genus Genus: 159
molecule keywords Band 3 anion transport protein
ec nomenclature
pdb deposition date 2015-03-25
KnotProt deposition date 2015-11-04
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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