4Z1WA

Crystal structure of monomeric bacteriophytochrome mutant d207l y263f from synchrotron
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 29-268 240 1-28, 269-317 28 49 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWD----HALRNAMSALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASLIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRELSEQVQVKEALE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 25-305 281 1-24, 306-313 24 8 knot
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3.2m 25-260 236 1-24 269-313 261-268 24 45 slipknot
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3.2m 27-284 258 1-26 306-313 285-305 26 8 slipknot
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4.1 26-305 280 306-313 1-24 25-25 24 7 slipknot
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3.2m 25-272 248 1-18, 284-313 19-24, 273-283 18 30 slipknot
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3.2 30-301 272 302-313 1-25 26-29 25 11 slipknot
missing residues 128-131
publication title Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
pubmed doi rcsb
structure length 313
molecule tags Transferase
source organism Deinococcus radiodurans
sequence length 317
total genus Genus: 86
molecule keywords Bacteriophytochrome
ec nomenclature
pdb deposition date 2015-03-27
KnotProt deposition date 2016-01-22
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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