5A7TA

Crystal structure of sulfolobus acidocaldarius trm10 at 2.4 angstrom resolution.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 164-212 49 1-163, 213-253 163 41 knot
Chain Sequence
VPRGSHMTLAKVFSQKLRELGISSIYIGHERPSLQSLAIKMLLKNYGLVEERREGMLITQDHGIKLISGKGTETSRYTFRKGGKKVSIHLPEYPKMVIDLGLFEFLNEEEKEKTLLQVDLCLSVIRKFLWDGNLTVVGKADYVLGRANIVQSLSLSDEDNPVILDPYGDVVATDQILRDHNVFVIGGIVDKGRRLDRATERLALSRGYSFPRVKIQLRGSIIGVPDEINKILEIILRVKELDQSLEEAIISLQ
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 162-213 52 1-161, 214-253 161 40 knot
view details
2.1 161-210 50 1-6, 214-253 7-160, 211-213 6 40 slipknot
publication title Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
pubmed doi rcsb
structure length 253
molecule tags Transferase
source organism Sulfolobus acidocaldarius
sequence length 253
total genus Genus: 70
molecule keywords TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
ec nomenclature
pdb deposition date 2015-07-09
KnotProt deposition date 2016-01-13
Image from the rcsb pdb (www.rcsb.org)
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