5A7YA

Crystal structure of sulfolobus acidocaldarius trm10 in complex with s-adenosylhomocysteine
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 89
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 159-207 49 1-158, 208-291 158 84 knot
Chain Sequence
HMTLAKVFSQKLRELGISSIYIGHERPSLQSLAIKMLLKNYGLVEERREGMLITQDHGIKLISGKGTETSRYTFRKGGKKVSIHLPEYPKMVIDLGLFEFLNEEEKEKTLLQVDLCLSVIRKFLWDGNLTVVGKADYVLGRANIVQSLSLSDEDNPVILDPYGDVVATDQILRDHNVFVIGG---------------------SFPRVKIQLRGSIIGVPDEINKILEIILRVKELDQSLEEAIISLQSKSDKISRLLHDVQLYGMEVLEEEARWLRADDKVIEIVRSRLG
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 158-187 30 1-157, 188-270 157 83 knot
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2.1 98-184 87 1-7, 188-270 8-97, 185-187 7 83 slipknot
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2.1 156-184 29 1-97, 188-270 98-155, 185-187 97 83 slipknot
sequence length 291
structure length 270
publication title Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
pubmed doi rcsb
molecule tags Transferase
molecule keywords TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
source organism Sulfolobus acidocaldarius
missing residues 183-203
total genus Genus: 89
ec nomenclature
pdb deposition date 2015-07-10
KnotProt deposition date 2016-01-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling