5A7YA

Crystal structure of sulfolobus acidocaldarius trm10 in complex with s-adenosylhomocysteine
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 159-207 49 1-158, 208-291 158 84 knot
Chain Sequence
HMTLAKVFSQKLRELGISSIYIGHERPSLQSLAIKMLLKNYGLVEERREGMLITQDHGIKLISGKGTETSRYTFRKGGKKVSIHLPEYPKMVIDLGLFEFLNEEEKEKTLLQVDLCLSVIRKFLWDGNLTVVGKADYVLGRANIVQSLSLSDEDNPVILDPYGDVVATDQILRDHNVFVIGG---------------------SFPRVKIQLRGSIIGVPDEINKILEIILRVKELDQSLEEAIISLQSKSDKISRLLHDVQLYGMEVLEEEARWLRADDKVIEIVRSRLG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 158-187 30 1-157, 188-270 157 83 knot
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2.1 98-184 87 1-7, 188-270 8-97, 185-187 7 83 slipknot
view details
2.1 156-184 29 1-97, 188-270 98-155, 185-187 97 83 slipknot
missing residues 183-203
publication title Structural and Functional Insights Into tRNA Binding and Adenosine N1-Methylation by an Archaeal Trm10 Homologue.
pubmed doi rcsb
structure length 270
molecule tags Transferase
source organism Sulfolobus acidocaldarius
sequence length 291
total genus Genus: 89
molecule keywords TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
ec nomenclature
pdb deposition date 2015-07-10
KnotProt deposition date 2016-01-13
Image from the rcsb pdb (www.rcsb.org)
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