5AFTM

Cryoem structure of dynactin complex at 4.0 angstrom resolution
Slipknot S -51 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 274-278 5 1-273, 279-824 273 545 slipknot
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-51 141-435 295 1-140, 436-824 140 388 slipknot
Chain Sequence
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Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 23-263 241 1-22 281-587 264-280 22 307 slipknot
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3.1m 23-280 258 1-22 290-587 281-289 22 298 slipknot
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3.1m 36-290 255 1-35 340-587 291-339 35 248 slipknot
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4.3 44-345 302 1-43 388-587 346-387 43 200 slipknot
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5.1m 37-387 351 1-36 413-587 388-412 36 175 slipknot
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3.1m 30-263 234 1-22, 281-587 23-29, 264-280 22 307 slipknot
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3.1m 30-280 251 1-22, 290-587 23-29, 281-289 22 298 slipknot
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2.1m 46-271 226 1-15, 297-587 16-45, 272-296 15 291 slipknot
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2.1m 46-296 251 1-35, 299-587 36-45, 297-298 35 289 slipknot
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2.1m 46-298 253 1-35, 301-587 36-45, 299-300 35 287 slipknot
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3.1m 64-263 200 1-29, 339-587 30-63, 264-338 29 249 slipknot
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3.1m 64-338 275 1-20, 344-587 21-63, 339-343 20 244 slipknot
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2.1m 64-343 280 1-20, 345-587 21-63, 344-344 20 243 slipknot
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2.1m 66-262 197 1-21, 295-587 22-65, 263-294 21 293 slipknot
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3.1m 66-294 229 1-63, 339-587 64-65, 295-338 63 249 slipknot
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3.1m 66-338 273 1-63, 344-587 64-65, 339-343 63 244 slipknot
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3.1m 66-343 278 1-63, 345-587 64-65, 344-344 63 243 slipknot
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2.1m 67-262 196 1-65, 295-587 66-66, 263-294 65 293 slipknot
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2.1m 67-295 229 1-65, 339-587 66-66, 296-338 65 249 slipknot
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2.1m 67-338 272 1-65, 344-587 66-66, 339-343 65 244 slipknot
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3.14m 46-345 300 1-43, 365-587 44-45, 346-364 43 223 slipknot
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3.1m 46-364 319 1-43, 370-587 44-45, 365-369 43 218 slipknot
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3.1m 46-369 324 1-43, 374-587 44-45, 370-373 43 214 slipknot
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3.14m 69-345 277 1-45, 365-587 46-68, 346-364 45 223 slipknot
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2.1m 69-364 296 1-45, 370-587 46-68, 365-369 45 218 slipknot
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3.14m 69-369 301 1-43, 384-587 44-68, 370-383 43 204 slipknot
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3.14m 69-383 315 1-43, 387-587 44-68, 384-386 43 201 slipknot
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4.3 70-389 320 1-41, 420-587 42-69, 390-419 41 168 slipknot
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1.1m 64-244 181 1-42, 263-587 43-63, 245-262 42 325 slipknot
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1.1m 66-248 183 1-63, 263-587 64-65, 249-262 63 325 slipknot
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2.1m 96-349 254 1-68, 383-587 69-95, 350-382 68 205 slipknot
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3.1m 97-388 292 1-66, 421-587 67-96, 389-420 66 167 slipknot
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3.1m 97-420 324 1-66, 425-587 67-96, 421-424 66 163 slipknot
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3.1m 100-383 284 1-69, 418-587 70-99, 384-417 69 170 slipknot
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3.1m 100-417 318 1-96, 421-587 97-99, 418-420 96 167 slipknot
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5.1m 104-469 366 470-587 1-74 75-103 74 117 slipknot
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4.3 102-430 329 1-77, 459-587 78-101, 431-458 77 129 slipknot
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5.8 100-458 359 1-81, 470-587 82-99, 459-469 81 118 slipknot
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4.3 102-458 357 1-99, 470-587 100-101, 459-469 99 118 slipknot
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4.3 104-443 340 1-101, 470-587 102-103, 444-469 101 118 slipknot
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4.3 109-443 335 1-103, 472-587 104-108, 444-471 103 116 slipknot
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4.3 109-471 363 1-103, 483-587 104-108, 472-482 103 105 slipknot
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4.3 109-482 374 1-103, 554-587 104-108, 483-553 103 34 slipknot
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4.3 114-446 333 1-108, 476-587 109-113, 447-475 108 112 slipknot
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4.3 114-475 362 1-108, 483-587 109-113, 476-482 108 105 slipknot
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4.3 114-482 369 1-108, 504-587 109-113, 483-503 108 84 slipknot
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5.1m 114-503 390 1-108, 525-587 109-113, 504-524 108 63 slipknot
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4.3 114-524 411 1-108, 554-587 109-113, 525-553 108 34 slipknot
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4.3 123-446 324 1-113, 476-587 114-122, 447-475 113 112 slipknot
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4.3 123-475 353 1-113, 554-587 114-122, 476-553 113 34 slipknot
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4.3 115-553 439 554-587 1-103 104-114 103 33 slipknot
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5.1m 119-553 435 554-587 1-114 115-118 114 33 slipknot
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1.1m 126-355 230 1-96, 375-587 97-125, 356-374 96 213 slipknot
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3.14m 121-423 303 1-97, 447-587 98-120, 424-446 97 141 slipknot
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2.1m 139-375 237 1-98, 426-587 99-138, 376-425 98 162 slipknot
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2.1m 139-425 287 1-120, 428-587 121-138, 426-427 120 160 slipknot
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2.1m 139-427 289 1-120, 429-587 121-138, 428-428 120 159 slipknot
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2.1m 139-428 290 1-120, 433-587 121-138, 429-432 120 155 slipknot
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4.3 124-446 323 1-122, 476-587 123-123, 447-475 122 112 slipknot
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4.3 130-458 329 1-122, 504-587 123-129, 459-503 122 84 slipknot
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4.3 130-503 374 1-122, 554-587 123-129, 504-553 122 34 slipknot
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4.3 142-458 317 1-129, 504-587 130-141, 459-503 129 84 slipknot
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4.3 142-503 362 1-129, 554-587 130-141, 504-553 129 34 slipknot
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4.3 142-553 412 1-118, 580-587 119-141, 554-579 118 8 slipknot
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4.3 142-579 438 580-587 1-118 119-141 118 7 slipknot
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4.3 140-448 309 1-123, 459-587 124-139, 449-458 123 129 slipknot
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4.3 143-458 316 1-141, 504-587 142-142, 459-503 141 84 slipknot
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4.3 143-503 361 1-141, 525-587 142-142, 504-524 141 63 slipknot
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4.3 143-524 382 1-141, 554-587 142-142, 525-553 141 34 slipknot
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4.3 143-553 411 1-141, 580-587 142-142, 554-579 141 8 slipknot
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4.3 143-579 437 580-587 1-141 142-142 141 7 slipknot
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2.1m 141-413 273 1-120, 435-587 121-140, 414-434 120 153 slipknot
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3.14m 126-434 309 1-120, 447-587 121-125, 435-446 120 141 slipknot
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3.14m 126-446 321 1-123, 449-587 124-125, 447-448 123 139 slipknot
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1.1m 130-354 225 1-105, 376-587 106-129, 355-375 105 212 slipknot
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3.14m 142-427 286 1-125, 454-587 126-141, 428-453 125 134 slipknot
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3.14m 142-453 312 1-139, 459-587 140-141, 454-458 139 129 slipknot
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3.14m 143-428 286 1-141, 459-587 142-142, 429-458 141 129 slipknot
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3.14m 146-428 283 1-142, 459-587 143-145, 429-458 142 129 slipknot
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3.14m 146-458 313 1-142, 466-587 143-145, 459-465 142 122 slipknot
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3.14m 146-465 320 1-142, 471-587 143-145, 466-470 142 117 slipknot
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3.14m 146-470 325 1-142, 472-587 143-145, 471-471 142 116 slipknot
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3.14m 148-440 293 1-145, 466-587 146-147, 441-465 145 122 slipknot
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3.14m 148-465 318 1-145, 471-587 146-147, 466-470 145 117 slipknot
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4.104m 148-470 323 1-145, 472-587 146-147, 471-471 145 116 slipknot
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3.14m 148-471 324 1-142, 473-587 143-147, 472-472 142 115 slipknot
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1.1m 140-354 215 1-129, 377-587 130-139, 355-376 129 211 slipknot
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2.1m 230-413 184 1-141, 445-587 142-229, 414-444 141 143 slipknot
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2.1m 230-444 215 1-147, 446-587 148-229, 445-445 147 142 slipknot
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2.1m 230-445 216 1-147, 449-587 148-229, 446-448 147 139 slipknot
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2.1m 230-448 219 1-147, 454-587 148-229, 449-453 147 134 slipknot
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2.1m 230-453 224 1-147, 455-587 148-229, 454-454 147 133 slipknot
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2.1m 230-454 225 1-147, 459-587 148-229, 455-458 147 129 slipknot
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2.1m 230-458 229 1-147, 460-587 148-229, 459-459 147 128 slipknot
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3.1m 229-461 233 462-587 1-142 143-228 142 125 slipknot
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3.1m 230-461 232 462-587 1-228 229-229 228 125 slipknot
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3.1m 232-461 230 462-587 1-229 230-231 229 125 slipknot
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3.1m 242-459 218 460-587 1-213 214-241 213 127 slipknot
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2.1m 249-459 211 460-587 1-241 242-248 241 127 slipknot
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3.1m 253-459 207 460-587 1-248 249-252 248 127 slipknot
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1.1m 253-427 175 1-231, 455-587 232-252, 428-454 231 133 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling