5AJ9A

G7 mutant of pas, arylsulfatase from pseudomonas aeruginosa
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 179
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 7-315 309 1-6 384-526 316-383 6 143 slipknot
Chain Sequence
KRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTDFHTASA-SPTRSMLLTGTDHHIAGLGTVAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLDFLDRHYDNSLENIGSANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDENTVTGWGLFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSDTGVVE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 8-318 311 1-7 354-525 319-353 7 172 slipknot
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3.1 4-369 366 1-3 377-525 370-376 3 149 slipknot
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2.1 5-380 376 1-4 384-525 381-383 4 142 slipknot
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2.1 9-327 319 1-7, 331-525 8-8, 328-330 7 195 slipknot
sequence length 526
structure length 525
publication title Arylsulfatase from Pseudomonas Aeruginosa
rcsb
molecule tags Hydrolase
molecule keywords ARYLSULFATASE
source organism Pseudomonas aeruginosa
missing residues 49
total genus Genus: 179
ec nomenclature
pdb deposition date 2015-02-20
KnotProt deposition date 2016-03-20
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling